Compliance Operations

Medical Billing Compliance Checklist

37 audit items across nine risk areas: medical necessity, modifiers 25 and 59, incident-to, E/M leveling, ABNs, the 60-day overpayment rule, OIG exclusion screening, records retention, and telehealth. Each item has a cite and a plain-language way to check it. Score your practice, then print the report.

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What Is a Medical Billing Compliance Checklist?

A medical billing compliance checklist is a self-audit that tests whether the claims a practice submits can survive a payer review. It sits alongside, not inside, your HIPAA compliance checklist: HIPAA governs how you handle patient information; billing compliance governs whether you were paid correctly for the care you documented.

This version has 37 items across nine risk areas that come straight from the OIG Work Plan, MAC audit programs, and the False Claims Act settlements that make the news. Every item cites the rule it comes from and tells you exactly what to pull to prove it. It pairs with the compliance work plan and the HIPAA audit checklist for a full annual program.

How to Use This Checklist

  1. 1

    Start with the four high-risk coding areas

    Medical necessity, modifiers, incident-to, and E/M leveling are where MACs and the OIG extrapolate. Pull 10 claims per provider and grade them against the "how to check" line on each item.

  2. 2

    Mark items met, gap, or N/A

    Click an item to mark it met. Use N/A for items that genuinely do not apply (the CMS-838 report for a physician practice, for example). N/A items are removed from the score so it stays honest.

  3. 3

    Read the Fix First line

    Any area under 70 percent shows up in the score panel. Those are the areas to open a corrective action for, using the work plan template to assign an owner and a date.

  4. 4

    Print or copy the report for the compliance file

    OIG expects evidence that auditing happened. Keep the dated report with your compliance committee minutes.

Billing Compliance Deadlines at a Glance

These are the clocks that matter most in a billing audit. Put each one on the compliance calendar with a named owner.

TriggerDeadlineAuthority
Overpayment identified60 days to report and return42 CFR 401.305(b)
Related-overpayment investigation180 days max, then the 60-day clock runs42 CFR 401.305(b)(3)
Overpayment lookback6 years from receipt42 CFR 401.305(f)
Medicare claim filing12 months from date of service42 CFR 424.44
Exclusion screeningMonthly (LEIE, SAM, state lists)OIG SAB, May 2013
Medicare order/referral records7 years from date of service42 CFR 424.516(f)
HIPAA compliance documents6 years45 CFR 164.530(j)
Part A credit balance report30 days after each quarterForm CMS-838
Medicare telehealth flexibilitiesExpire Dec 31, 2027 unless extendedCAA, 2026
Revised ABN form mandatoryMay 12, 2026 (valid to Mar 31, 2029)CMS-R-131

Example: A Three-Physician Family Practice

A practice with three physicians and two nurse practitioners runs the checklist for the first time. The coding areas score well, but two findings stand out.

Incident-to: one NP has been the only clinician seeing 40 established patients for 18 months, all billed under a physician's NPI. The chart shows no physician visits in that period. The practice re-bills the last six years of those visits under the NP's NPI and refunds the 15 percent difference within 60 days of finishing the review.

ABN: the intake template still prints the ABN version that expired in January 2026. Any ABN signed on that form after May 12, 2026 is at risk, so the template is swapped and the front desk is retrained the same week.

Both findings go on the work plan. Neither is a fraud case, but both would have been if they had been found by a payer first. The Stark and Anti-Kickback guide covers the referral-side risks this checklist does not.

Common Questions

Cites verified against the eCFR, CMS manuals, and OIG guidance as of August 2026. This is general compliance information, not legal advice. Confirm current rules with your MAC and counsel before acting on a finding. Related reading: ABN guide, clinical documentation improvement, common HIPAA violations.

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